PLX046743

GSE109429: Next Generation Sequencing Facilitates Quantitative Analysis of Ter cells Transcriptomes

• Organsim mouse
• Type RNASEQ
• Target gene
• Project ARCHS4

Purpose:The purpose of this study is to detect genes Ter-119+CD45Lin cells sorted from spleen of tumor-bearing mice and the control cells. Gene expression differences between seven samples could be found using transcriptome profiling (RNA-seq) analysis. Methods: The seven cell subsets were isolated from spleen of tumor-bearing mice, embryonic liver (E14.5) and bone marrow of wild type mice by cell sorter respectively. Cells with purity >98% were used for subsequent experiments. The cell subsets RNA profiles were generated by deep sequencing,using Illumina. Results: Genes with FPKM values above 10.0 in the cell groups were used for subsequent analysis. Single linkage clustering analysis between the groups and prcomp function-based PCA analysis on the expression matrix were performed by R software. We found that the tumor-induced Ter-119+CD45Lin cells expressed the transcriptional factors and functional genes associated with erythrocyte and megakaryocyte development, but not myeloid cells differentiation. SOURCE: Qian Zhang (oilpangpang@hotmail.com) - Second military medical university