PLX160950

GSE143627: Inactivated M. tuberculosis and M.tuberculosis Infection remodels the macrophage response

  • Organsim human
  • Type RNASEQ
  • Target gene
  • Project ARCHS4

Background: Tuberculosis (TB) remains a major public health problem, especially in developing countries, with 1.5 million deaths annually worldwide. Macrophages (Ms) are central to TB pathogenesis. Ms play a key role in the outcome of the infection. More importantly, Ms are the primary cell target of MTB, which has developed different strategies to multiply inside the M phagosome. Here we aim to compare the transcriptome of Mycobacterium tuberculosis (MTB)-infected Ms with that of cells stimulated with heat-killed MTB.; Results: Here, we used live and heat-inactivated MTB to examine the impact of infection on the human macrophage response. Gene expression profiling has revealed about 3,259 genes differentially expressed in macrophages incubated with heat-inactivated MTB and 4,179 genes differentially expressed with live MTB. We found that the response to live and heat-inactivated MTB was strongly correlated (r>0.78).; Conclusions: Our results show that macrophages respond in a similar manner to live and heat-inactivated MTB. We also identified some genes differentially expressed only in one condition. SOURCE: Alexandre Giraud-Gatineau (alexandre.giraud.gatineau@gmail.com) - integrated mycobacterial pathogenomics Institut Pasteur

View on GEOView in Pluto

Key Features

Enhance your research with our curated data sets and powerful platform features. Pluto Bio makes it simple to find and use the data you need.

Learn More

14K+ Published Experiments

Access an extensive range of curated bioinformatics data sets, including genomic, transcriptomic, and proteomic data.

Easy Data Import

Request imports from GEO or TCGA directly within Pluto Bio. Seamlessly integrate external data sets into your workflow.

Advanced Search Capabilities

Utilize powerful search tools to quickly find the data sets relevant to your research. Filter by type, disease, gene, and more.

Analyze and visualize data for this experiment

Use Pluto's intuitive interface to analyze and visualize data for this experiment. Pluto's platform is equipped with an API & SDKs, making it easy to integrate into your internal bioinformatics processes.

Read about post-pipeline analysis

View QC data and experiment metadata

View quality control data and experiment metadata for this experiment.

Request import of other GEO data

Request imports from GEO or TCGA directly within Pluto Bio.

Chat with our Scientific Insights team