PLX249052

GSE149123: RNAseq for perigonadal WAT of adipose tissue specific CDK7 knockout mice under CL or saline treatment for 7 days.

• Organsim mouse
• Type RNASEQ
• Target gene
• Project ARCHS4

Purpose: The goal of this study are to compare global gene expression profile in pgWAT in Cdk7 aKO and WT control mice after CL or saline treatment for 7 days.; Methods: pgWAT pads were taken from 9-week-old CDK7 aKO and control littermates either treated with CL or saline control for 7 days. Mice were sacrificed at zeitgeber time 9. Total RNA was extracted with TRI Reagent (Sigma). Two RNA samples from two mice with same genotype and condition were pool together (each 250 ng) to constitute 500 ng of total RNA from biological triplicates for sequencing.; Results: Reads were also aligned to the Mus musculus.GRCm38.86 transcriptome using STAR (v. 2.5.2b, Dobin et al. 2013) and the estimation of the isoforms abundance was computed using RSEM (v. 1.2.31, Li and Dewey 2011).; Conclusions: Differentially expressed genes (DEGs) were identified between genotype and treatment. SOURCE: Rene Dreos (rene.dreos@unil.ch) - Gatfield Lab UNIL